Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae
Identifieur interne : 000A25 ( Main/Exploration ); précédent : 000A24; suivant : 000A26Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae
Auteurs : W. Quaedvlieg [Pays-Bas] ; M. Binder [Pays-Bas] ; J. Z. Groenewald [Pays-Bas] ; B. A. Summerell [Australie] ; A. J. Carnegie [Australie] ; T. I. Burgess [Australie] ; P. W. Crous [Pays-Bas]Source :
- Persoonia : Molecular Phylogeny and Evolution of Fungi [ 0031-5850 ] ; 2014.
Abstract
The
Url:
DOI: 10.3767/003158514X681981
PubMed: 25737591
PubMed Central: 4312929
Affiliations:
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Binder</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Summerell, B A" sort="Summerell, B A" uniqKey="Summerell B" first="B. A." last="Summerell">B. A. 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Quaedvlieg</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Binder, M" sort="Binder, M" uniqKey="Binder M" first="M." last="Binder">M. Binder</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Summerell, B A" sort="Summerell, B A" uniqKey="Summerell B" first="B. A." last="Summerell">B. A. Summerell</name><affiliation wicri:level="1"><nlm:aff id="A2">Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000, Australia.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Australie</country><wicri:regionArea>Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000</wicri:regionArea><wicri:noRegion>NSW 2000</wicri:noRegion></affiliation></author><author><name sortKey="Carnegie, A J" sort="Carnegie, A J" uniqKey="Carnegie A" first="A. J." last="Carnegie">A. J. Carnegie</name><affiliation wicri:level="1"><nlm:aff id="A3">Biosecurity NSW, NSW Department of Primary Industries, P.O. Box 100, Beecroft, New South Wales 2119, Australia.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Australie</country><wicri:regionArea>Biosecurity NSW, NSW Department of Primary Industries, P.O. Box 100, Beecroft, New South Wales 2119</wicri:regionArea><wicri:noRegion>New South Wales 2119</wicri:noRegion></affiliation></author><author><name sortKey="Burgess, T I" sort="Burgess, T I" uniqKey="Burgess T" first="T. I." last="Burgess">T. I. Burgess</name><affiliation wicri:level="1"><nlm:aff id="A4">State Centre of Excellence in Climate Change and Woodland and Forest Health, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Australie</country><wicri:regionArea>State Centre of Excellence in Climate Change and Woodland and Forest Health, Murdoch University, 90 South Street, Murdoch, WA 6150</wicri:regionArea><wicri:noRegion>WA 6150</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="A5">Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea>Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="A6">Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea>Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Persoonia : Molecular Phylogeny and Evolution of Fungi</title><idno type="ISSN">0031-5850</idno><idno type="eISSN">1878-9080</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The <italic>Teratosphaeriaceae</italic> represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the <italic>Mycosphaerellaceae</italic> from the <italic>Teratosphaeriaceae</italic>, and also provide support for the <italic>Extremaceae</italic> and <italic>Neodevriesiaceae</italic>, two novel families including many extremophilic fungi that occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, Act, RPB2, EF-1α and Cal) to distinguish taxa in <italic>Mycosphaerella</italic> and <italic>Teratosphaeria</italic> associated with leaf disease of <italic>Eucalyptus</italic>, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species concepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of <italic>Pseudocercospora</italic>). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Andjic, V" uniqKey="Andjic V">V Andjic</name></author><author><name sortKey="Barber, Pa" uniqKey="Barber P">PA Barber</name></author><author><name sortKey="Carnegie, Aj" uniqKey="Carnegie A">AJ Carnegie</name></author><author><name sortKey="Pegg, Gs" uniqKey="Pegg G">GS Pegg</name></author><author><name sortKey="Hardy, Ge" uniqKey="Hardy G">GE Hardy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Andjic, V" uniqKey="Andjic V">V Andjic</name></author><author><name sortKey="Whyte, G" uniqKey="Whyte G">G Whyte</name></author><author><name sortKey="Hardy, G" uniqKey="Hardy G">G Hardy</name></author><author><name sortKey="Burgess, T" uniqKey="Burgess T">T 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d'Utrecht</li></orgName></list><tree><country name="Pays-Bas"><noRegion><name sortKey="Quaedvlieg, W" sort="Quaedvlieg, W" uniqKey="Quaedvlieg W" first="W." last="Quaedvlieg">W. 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